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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30669586_30669836_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30669586 - 30669836
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
ATTTCATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AACATATGAATT
Flanking Amino Acid:
YAYEPSDISLLYSNMQKALK
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
74.7
41.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.2
0.66
0.8
71
39.3
Minor 5ss
39.4
-1.2
2.9
52.3
44.3
Minor BPS
45.8
-0.2
1.6
58.24
38.4

Associated Gene:

Gene:
AGR2
Ensembl Gene ID:
ENSAPLG00000008615
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008994
30669274 - 30672633
3360