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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30670947_30671359_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30670947 - 30671359
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
GCAATCTTGACT
Flanking Amino Acid:
AEKFILLNLVYETTDKNLAP
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
79.2
0.66
1
83.6
31.9
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
60.8
0.42
1.3
68.95
41.8

Associated Gene:

Gene:
AGR2
Ensembl Gene ID:
ENSAPLG00000008615
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008994
30669274 - 30672633
3360