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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30684597_30685448_F

Intron Information:

Intron Rank:
149907
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
30684597 - 30685448
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTGTCT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AATTCTTGATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.1
60.3
38.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
45.7
-0.5
3.1
62.6
44.1
Minor BPS
56.4
0.2
1.7
68.04
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030642
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036354
30683615 - 30686840
3226