Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30704559_30705600_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30704559 - 30705600

Intron Length:

1042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGTACA

5'SS Class:

strong_major

3'SS Sequence:

GTTACTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTAAT

U12 Branch Point Sequence:

CAGTGATTAATA

Flanking Amino Acid:

GQYVPRIMFIDPSLTVRADI

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

80.7

33.8

Major BPS

0.6

1.2

75.9

36.3

Major PPT

83.9

0.76

0.8

80.9

36.6

Minor 5ss

34.6

-1.7

2.9

Minor BPS

48.1

-0.1

57.25

42.5

Associated Gene:

Gene:

AGR3

Ensembl Gene ID:

ENSAPLG00000008767

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033180

30702571 - 30712720

10150

ENSAPLT00000009109

30702571 - 30712756

10186