Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30876752_30884227_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30876752 - 30884227

Intron Length:

7476

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGCGGC

5'SS Class:

major

3'SS Sequence:

TTCTTTGCCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TTTTGTTTATAT

Flanking Amino Acid:

SRKRRKPVQKIVKPSPAEGV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

63.9

Major BPS

79.2

0.73

75.3

39.4

Major PPT

80.5

0.69

0.8

75.8

32.8

Minor 5ss

39.1

-1.2

3.4

54.4

43.4

Minor BPS

55.1

0.24

2.1

80.79

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008769

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009156

30876483 - 30934845

58363

ENSAPLT00000022927

30876483 - 30935542

59060