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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_308846_313578_R

Intron Information:

Intron Rank:
143767
Intron Class:
major
Intron Phase:
Intron Coordinates:
308846 - 313578
Intron Length:
4733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGTTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.8
38.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.2
0.66
0.9
74.8
33.6
Minor 5ss
37.9
-1.4
2.9
50.8
38.5
Minor BPS
54.5
0.12
1.7
64.74
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024666
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019833
308578 - 313713
5136