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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30926766_30927384_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30926766 - 30927384
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTGTCATCT
Flanking Amino Acid:
CLLDNSSGFLAMNFQGRLKF
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
69.6
0.44
1.1
73
36.7
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
48.8
-0
2.4
79.56
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009156
30876483 - 30934845
58363
ENSAPLT00000022927
30876483 - 30935542
59060