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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30927588_30927975_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30927588 - 30927975
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTACCT
Flanking Amino Acid:
LDFTPTGCDAKGKIVLGYTE
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.6
0.82
0.8
78
36.1
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
67.3
0.62
1.6
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022927
30876483 - 30935542
59060
ENSAPLT00000009156
30876483 - 30934845
58363