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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30928086_30929514_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30928086 - 30929514
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
TCTTCAATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TGCTCTTCAATT
Flanking Amino Acid:
MLYCAENHVRMMKTGESGMT
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.5
36.3
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
77.5
0.62
0.8
75.1
33.4
Minor 5ss
46.8
-0.3
2.7
60.7
37.9
Minor BPS
64.4
0.53
1.5
76.63
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022927
30876483 - 30935542
59060
ENSAPLT00000009156
30876483 - 30934845
58363