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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30930357_30930449_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30930357 - 30930449
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAA
U12 Branch Point Sequence:
GTCTGTGTATCT
Flanking Amino Acid:
PRNKATTGKGASHKLSFERN
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
63.3
0.33
1.2
55.4
41.7
Major PPT
79.7
0.67
0.8
70.1
36.5
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
42.5
-0.4
2.5
63.63
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022927
30876483 - 30935542
59060