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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30930750_30930839_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30930750 - 30930839
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGATG
5'SS Class:
major
3'SS Sequence:
TTCTTATATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GATTCCTTAAAT
Flanking Amino Acid:
DEDFFKTELSGCNQQQPVVQ
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
67.8
42.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.1
0.74
0.9
81.8
33.8
Minor 5ss
42.1
-0.9
3.1
53.6
44.9
Minor BPS
79.6
1.01
1.3
88
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008769
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009156
30876483 - 30934845
58363