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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31013585_31018011_R

Intron Information:

Intron Rank:
155476
Intron Class:
major
Intron Phase:
Intron Coordinates:
31013585 - 31018011
Intron Length:
4427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
AGATCAGGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
70.7
33.2
Major BPS
84.6
0.86
1
74
41.2
Major PPT
80.7
0.69
0.9
76.3
32.2
Minor 5ss
30.8
-2.2
3.3
40
45.5
Minor BPS
41.5
-0.5
2.3
60.22
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031142
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024125
30964357 - 31018776
54420