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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31018058_31018136_R

Intron Information:

Intron Rank:
155477
Intron Class:
major
Intron Phase:
Intron Coordinates:
31018058 - 31018136
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGCTTT
5'SS Class:
major
3'SS Sequence:
TTTCATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
AAGAACTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77.7
33.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.1
0.88
0.7
83.7
30.9
Minor 5ss
46
-0.4
3.1
64.7
41
Minor BPS
60.4
0.32
1.6
65.33
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031142
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024125
30964357 - 31018776
54420