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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31018058_31019262_R

Intron Information:

Intron Rank:
155479
Intron Class:
major
Intron Phase:
Intron Coordinates:
31018058 - 31019262
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
AAGAACTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.4
30.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.1
0.88
0.7
83.7
30.9
Minor 5ss
23.1
-3.1
3.2
28
44
Minor BPS
60.4
0.32
1.6
65.33
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031142
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037301
31015440 - 31019500
4061