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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31100097_31100615_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31100097 - 31100615
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTGATTTAAAC
Flanking Amino Acid:
GKTKLLEVMPDELKHIIGAE
Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.8
76.2
39.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.7
85
29.6
Minor 5ss
32.1
-2
3.1
40.6
45.6
Minor BPS
59.7
0.28
1.7
72.42
38.5

Associated Gene:

Gene:
SNX13
Ensembl Gene ID:
ENSAPLG00000009153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018790
31099193 - 31163954
64762
ENSAPLT00000009623
31099193 - 31163954
64762
ENSAPLT00000045753
31099193 - 31163954
64762