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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31101945_31103688_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31101945 - 31103688
Intron Length:
1744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTTT
5'SS Class:
major
3'SS Sequence:
GCTTTGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GTTGCTTTGATT
Flanking Amino Acid:
IRATYGDTINRKIVDHVDWM
Intron Amino Acid Position:
887

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
72.5
39.4
Major BPS
84
0.85
0.9
75
39.9
Major PPT
73.5
0.53
0.9
70.3
40
Minor 5ss
41.7
-0.9
3.6
64.7
46.6
Minor BPS
66.9
0.61
1.3
79.17
37.6

Associated Gene:

Gene:
SNX13
Ensembl Gene ID:
ENSAPLG00000009153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018790
31099193 - 31163954
64762
ENSAPLT00000009623
31099193 - 31163954
64762
ENSAPLT00000045753
31099193 - 31163954
64762