About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31103835_31105974_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31103835 - 31105974
Intron Length:
2140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTACTCGGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTGTTTTTACTC
Flanking Amino Acid:
CRVAAPIDDNVDDNIPLRVM
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.8
41
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
69.7
0.44
1.1
69.8
41.3
Minor 5ss
34.8
-1.7
3.1
45.9
42.4
Minor BPS
53.2
0.08
1.6
60.45
40.3

Associated Gene:

Gene:
SNX13
Ensembl Gene ID:
ENSAPLG00000009153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045753
31099193 - 31163954
64762
ENSAPLT00000018790
31099193 - 31163954
64762
ENSAPLT00000009623
31099193 - 31163954
64762