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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31106047_31108071_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31106047 - 31108071
Intron Length:
2025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
GATTTCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTCCTTCATA
Flanking Amino Acid:
SKGKGDFARKVPPLIQKTYS
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.7
0.62
0.9
70.8
39.4
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
77
0.84
1.6
87.11
31.6

Associated Gene:

Gene:
SNX13
Ensembl Gene ID:
ENSAPLG00000009153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018790
31099193 - 31163954
64762