About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31108183_31109059_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31108183 - 31109059
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTACTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
CTTTCAACAATA
Flanking Amino Acid:
RKKDLNAYLQLLLNPEMMKA
Intron Amino Acid Position:
724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
75.4
0.57
0.9
74.3
39.7
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
47.8
-0.1
2
65.95
40.4

Associated Gene:

Gene:
SNX13
Ensembl Gene ID:
ENSAPLG00000009153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009623
31099193 - 31163954
64762
ENSAPLT00000045753
31099193 - 31163954
64762
ENSAPLT00000018790
31099193 - 31163954
64762