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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31109168_31110928_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31109168 - 31110928
Intron Length:
1761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
ACAGAATGAAAA
Flanking Amino Acid:
HDFHMRITEQFENLANILKL
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
34.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
42
-0.9
2.9
59.3
45.1
Minor BPS
39.2
-0.8
1.8
43.44
37.2

Associated Gene:

Gene:
SNX13
Ensembl Gene ID:
ENSAPLG00000009153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045753
31099193 - 31163954
64762
ENSAPLT00000018790
31099193 - 31163954
64762
ENSAPLT00000009623
31099193 - 31163954
64762