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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31123167_31124118_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31123167 - 31124118
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TGTTGCCTATTT
Flanking Amino Acid:
VDNVALQFFMDYMQQTGGQA
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
70.9
0.47
1
66.2
40.8
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
47.6
-0.1
2.3
73.33
43.7

Associated Gene:

Gene:
SNX13
Ensembl Gene ID:
ENSAPLG00000009153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045753
31099193 - 31163954
64762
ENSAPLT00000018790
31099193 - 31163954
64762
ENSAPLT00000009623
31099193 - 31163954
64762