About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31125404_31126164_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31125404 - 31126164
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCTGCATTACTA
Flanking Amino Acid:
YLRSLDTAGDDINTIKNQIN
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
78.3
35.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
34.9
-1.7
2.6
42.8
37.6
Minor BPS
49.3
-0
2
63.77
43.2

Associated Gene:

Gene:
SNX13
Ensembl Gene ID:
ENSAPLG00000009153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045753
31099193 - 31163954
64762
ENSAPLT00000018790
31099193 - 31163954
64762
ENSAPLT00000009623
31099193 - 31163954
64762