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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31129549_31130212_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31129549 - 31130212
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTTTCAA
5'SS Class:
major
3'SS Sequence:
TCTCCCTGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGAAT
U12 Branch Point Sequence:
TTCTCCCTGACT
Flanking Amino Acid:
LVCTSPKDEEGFLRDLCEVL
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.3
59.6
40.9
Major BPS
49.1
-0
1.5
58
45.4
Major PPT
64.4
0.33
0.9
58.9
37
Minor 5ss
35.1
-1.7
2.7
41.8
44.6
Minor BPS
71.7
0.76
1.7
88.31
36.8

Associated Gene:

Gene:
SNX13
Ensembl Gene ID:
ENSAPLG00000009153
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045753
31099193 - 31163954
64762
ENSAPLT00000018790
31099193 - 31163954
64762
ENSAPLT00000009623
31099193 - 31163954
64762