Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31189432_31192473_R

Intron Information:

Intron Rank:

144284

Intron Class:

major

Intron Phase:

Intron Coordinates:

31189432 - 31192473

Intron Length:

3042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTGT

5'SS Class:

strong_major

3'SS Sequence:

AAATTTCAATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTCCTAAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.9

78.8

38.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

62.7

0.29

1.1

61.1

43.9

Minor 5ss

45.6

-0.5

2.9

46.2

Minor BPS

80.6

1.04

1.5

95.75

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024894

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032324

31189400 - 31197401

8002