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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31197200_31197357_R

Intron Information:

Intron Rank:
144287
Intron Class:
major
Intron Phase:
Intron Coordinates:
31197200 - 31197357
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAACAAC
5'SS Class:
major
3'SS Sequence:
TCTATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
67.4
37.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.7
88
29.1
Minor 5ss
39.2
-1.2
3
48.3
42.3
Minor BPS
62.2
0.47
1.5
82.94
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024894
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047502
31192013 - 31197401
5389
ENSAPLT00000032324
31189400 - 31197401
8002