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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31248978_31409497_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31248978 - 31409497
Intron Length:
160520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
ATTTACGAGAGT
Flanking Amino Acid:
MSSTTQPDGVSGREQLL
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1.2
78.8
38.3
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
39.2
-1.2
2.8
49.7
46.6
Minor BPS
40.8
-0.6
2.6
65.96
44.8

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038011
31248862 - 31503432
254571
ENSAPLT00000024368
31248862 - 31504412
255551
ENSAPLT00000010214
31248862 - 31685213
436352
ENSAPLT00000044846
31248862 - 31685248
436387