Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31273016_31273492_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31273016 - 31273492

Intron Length:

477

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTACGTGAG

5'SS Class:

major

3'SS Sequence:

TTATTCTTCCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

TTTAAAATAAAC

Flanking Amino Acid:

MDEWEAIQQRWKALLR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

1.1

65.5

40.5

Major BPS

73.1

0.58

79.6

29.1

Major PPT

79.9

0.67

0.8

73.8

36.6

Minor 5ss

33.4

-1.9

3.4

43.9

44.2

Minor BPS

45.3

-0.3

2.1

64.51

39.7

Associated Gene:

Gene:

HDAC9

Ensembl Gene ID:

ENSAPLG00000009768

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019909

31272996 - 31545947

272952