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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31285948_31409497_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31285948 - 31409497
Intron Length:
123550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
ATTTACGAGAGT
Flanking Amino Acid:
YKNETMYALADGVSGREQLL
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
40.8
-0.6
2.6
65.96
44.8

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023749
31285911 - 31545947
260037