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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31285948_31458347_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31285948 - 31458347
Intron Length:
172400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
ATGTATATATTT
Flanking Amino Acid:
YKNETMYALAVDVKSEVPVG
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
88.7
0.87
0.6
88
21.8
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
45.2
-0.2
1.9
63.95
40.8

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026783
31285911 - 31502813
216903