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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31317191_31409497_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31317191 - 31409497
Intron Length:
92307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TGTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
ATTTACGAGAGT
Flanking Amino Acid:
MFASTALKNNGVSGREQLL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
40.8
-0.6
2.6
65.96
44.8

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034432
31317163 - 31502813
185651