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Intron Name: Anas_platyrhynchos_platyrhynchos_2_31409561_31458347_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31409561 - 31458347

Intron Length:

48787

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTTCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAA

U12 Branch Point Sequence:

ATGTATATATTT

Flanking Amino Acid:

QQRMHSMISSVDVKSEVPVG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.9

0.96

0.8

78.6

28.9

Major BPS

79.5

0.73

0.9

36.9

Major PPT

88.7

0.87

0.6

21.8

Minor 5ss

30.7

-2.2

3.3

40.8

45.7

Minor BPS

45.2

-0.2

1.9

63.95

40.8

Associated Gene:

Gene:

HDAC9

Ensembl Gene ID:

ENSAPLG00000009768

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023749

31285911 - 31545947

260037

ENSAPLT00000044846

31248862 - 31685248

436387

ENSAPLT00000019909

31272996 - 31545947

272952

ENSAPLT00000038011

31248862 - 31503432

254571

ENSAPLT00000010214

31248862 - 31685213

436352

ENSAPLT00000034432

31317163 - 31502813

185651

ENSAPLT00000024368

31248862 - 31504412

255551