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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31458590_31459532_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31458590 - 31459532
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCAACA
5'SS Class:
major
3'SS Sequence:
TGTTCTGTGCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTCTCATGT
Flanking Amino Acid:
HQAQLQEHIKLQQELLAIKQ
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.2
65.3
40.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
60.2
0.23
1.2
60
45.2
Minor 5ss
37.9
-1.4
3.1
50
46
Minor BPS
49.4
0.03
2.1
74.07
42.9

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023749
31285911 - 31545947
260037
ENSAPLT00000034432
31317163 - 31502813
185651
ENSAPLT00000019909
31272996 - 31545947
272952
ENSAPLT00000026783
31285911 - 31502813
216903
ENSAPLT00000010214
31248862 - 31685213
436352
ENSAPLT00000024368
31248862 - 31504412
255551
ENSAPLT00000044846
31248862 - 31685248
436387
ENSAPLT00000023873
31409498 - 31560335
150838
ENSAPLT00000038011
31248862 - 31503432
254571