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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31459684_31462108_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31459684 - 31462108
Intron Length:
2425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCACC
5'SS Class:
major
3'SS Sequence:
CTGTGTGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATGTTTAATT
Flanking Amino Acid:
PLRGKERGRERAVASTEVKQ
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
72.6
37.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.3
0.37
1
60.4
40.4
Minor 5ss
42.4
-0.8
2.8
53.9
36.9
Minor BPS
64.5
0.53
1.7
78.82
37.8

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010214
31248862 - 31685213
436352
ENSAPLT00000024368
31248862 - 31504412
255551
ENSAPLT00000044846
31248862 - 31685248
436387
ENSAPLT00000023873
31409498 - 31560335
150838
ENSAPLT00000038011
31248862 - 31503432
254571
ENSAPLT00000023749
31285911 - 31545947
260037
ENSAPLT00000034432
31317163 - 31502813
185651
ENSAPLT00000019909
31272996 - 31545947
272952
ENSAPLT00000026783
31285911 - 31502813
216903