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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31462236_31464203_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31462236 - 31464203
Intron Length:
1968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
GTGTCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TAATTTGTGACC
Flanking Amino Acid:
SMNRHPKLWYTAAHHTSLDQ
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.3
70.3
36.5
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
72.5
0.51
1
65.8
40.9
Minor 5ss
48
-0.2
2.3
57.9
40.1
Minor BPS
48.9
-0.1
2
62.17
37.6

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023749
31285911 - 31545947
260037
ENSAPLT00000034432
31317163 - 31502813
185651
ENSAPLT00000019909
31272996 - 31545947
272952
ENSAPLT00000026783
31285911 - 31502813
216903
ENSAPLT00000044846
31248862 - 31685248
436387
ENSAPLT00000010214
31248862 - 31685213
436352
ENSAPLT00000024368
31248862 - 31504412
255551
ENSAPLT00000023873
31409498 - 31560335
150838
ENSAPLT00000038011
31248862 - 31503432
254571