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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31464326_31481967_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31464326 - 31481967
Intron Length:
17642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTTTTATAATC
Flanking Amino Acid:
AKDDFPLRKTASEPNLKVRS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
37.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.4
0.75
0.8
77.7
29.8
Minor 5ss
33.7
-1.9
2.8
31.9
42.5
Minor BPS
61.1
0.33
1.5
71.34
33.8

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010214
31248862 - 31685213
436352
ENSAPLT00000024368
31248862 - 31504412
255551
ENSAPLT00000044846
31248862 - 31685248
436387
ENSAPLT00000023873
31409498 - 31560335
150838
ENSAPLT00000038011
31248862 - 31503432
254571
ENSAPLT00000023749
31285911 - 31545947
260037
ENSAPLT00000034432
31317163 - 31502813
185651
ENSAPLT00000019909
31272996 - 31545947
272952
ENSAPLT00000026783
31285911 - 31502813
216903