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Intron Name: Anas_platyrhynchos_platyrhynchos_2_31484931_31490804_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31484931 - 31490804

Intron Length:

5874

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGACTC

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTATTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TTTCTCTTTATT

Flanking Amino Acid:

SVLPSSIQAEHLVSQQRLLI

Intron Amino Acid Position:

326

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

35.3

Major BPS

83.9

0.84

73.9

41.3

Major PPT

84.7

0.78

0.8

77.1

35.8

Minor 5ss

36.5

-1.5

3.2

50.8

45.8

Minor BPS

67.4

0.63

1.6

85.04

35.1

Associated Gene:

Gene:

HDAC9

Ensembl Gene ID:

ENSAPLG00000009768

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023749

31285911 - 31545947

260037

ENSAPLT00000034432

31317163 - 31502813

185651

ENSAPLT00000019909

31272996 - 31545947

272952

ENSAPLT00000026783

31285911 - 31502813

216903

ENSAPLT00000010214

31248862 - 31685213

436352

ENSAPLT00000024368

31248862 - 31504412

255551

ENSAPLT00000044846

31248862 - 31685248

436387

ENSAPLT00000023873

31409498 - 31560335

150838

ENSAPLT00000038011

31248862 - 31503432

254571