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Intron Name: Anas_platyrhynchos_platyrhynchos_2_31490928_31493292_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31490928 - 31493292

Intron Length:

2365

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTGAC

5'SS Class:

major

3'SS Sequence:

TGTTTTTTGACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTCAT

U12 Branch Point Sequence:

TGTTTTTTGACA

Flanking Amino Acid:

GLPAVQTQITASSSFKEKQK

Intron Amino Acid Position:

367

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

1.1

69.1

35.8

Major BPS

67.1

0.42

1.4

71.4

45.1

Major PPT

82.4

0.73

79.9

37.7

Minor 5ss

35.9

-1.6

3.3

53.4

43.8

Minor BPS

73.4

0.73

1.1

78.31

31.5

Associated Gene:

Gene:

HDAC9

Ensembl Gene ID:

ENSAPLG00000009768

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023749

31285911 - 31545947

260037

ENSAPLT00000034432

31317163 - 31502813

185651

ENSAPLT00000019909

31272996 - 31545947

272952

ENSAPLT00000026783

31285911 - 31502813

216903

ENSAPLT00000010214

31248862 - 31685213

436352

ENSAPLT00000024368

31248862 - 31504412

255551

ENSAPLT00000044846

31248862 - 31685248

436387

ENSAPLT00000023873

31409498 - 31560335

150838

ENSAPLT00000038011

31248862 - 31503432

254571