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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31493504_31493877_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31493504 - 31493877
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGATC
5'SS Class:
major
3'SS Sequence:
CACTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TTTTTCTTTACA
Flanking Amino Acid:
QMRQQKLLVTGAVPLHPQSP
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
71.5
38.2
Major BPS
72.8
0.57
1
81
30.3
Major PPT
81.7
0.71
0.8
76
32
Minor 5ss
37
-1.5
3.3
49
41.5
Minor BPS
77.1
0.85
1.5
87.01
30.8

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019909
31272996 - 31545947
272952
ENSAPLT00000026783
31285911 - 31502813
216903
ENSAPLT00000010214
31248862 - 31685213
436352
ENSAPLT00000024368
31248862 - 31504412
255551
ENSAPLT00000044846
31248862 - 31685248
436387
ENSAPLT00000023873
31409498 - 31560335
150838
ENSAPLT00000038011
31248862 - 31503432
254571
ENSAPLT00000023749
31285911 - 31545947
260037
ENSAPLT00000034432
31317163 - 31502813
185651