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Intron Name: Anas_platyrhynchos_platyrhynchos_2_31494096_31502492_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31494096 - 31502492

Intron Length:

8397

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAACCAT

U12 Branch Point Sequence:

GAGTCAGTAACC

Flanking Amino Acid:

QYQQQIHMNKMLSKSIEQLK

Intron Amino Acid Position:

510

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.5

0.98

0.7

26.6

Major BPS

57.8

0.19

1.3

67.1

39.2

Major PPT

88.1

0.86

0.7

80.4

31.6

Minor 5ss

-1.6

2.8

44.6

43.4

Minor BPS

48.3

-0.1

2.2

61.73

Associated Gene:

Gene:

HDAC9

Ensembl Gene ID:

ENSAPLG00000009768

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023749

31285911 - 31545947

260037

ENSAPLT00000034432

31317163 - 31502813

185651

ENSAPLT00000019909

31272996 - 31545947

272952

ENSAPLT00000026783

31285911 - 31502813

216903

ENSAPLT00000010214

31248862 - 31685213

436352

ENSAPLT00000024368

31248862 - 31504412

255551

ENSAPLT00000044846

31248862 - 31685248

436387

ENSAPLT00000023873

31409498 - 31560335

150838

ENSAPLT00000038011

31248862 - 31503432

254571