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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31502763_31503420_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31502763 - 31503420
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGGC
5'SS Class:
major
3'SS Sequence:
ATACTGTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAATTTTTCATT
Flanking Amino Acid:
SGEQAAFMQQRHS*
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.2
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
73.2
0.52
1
66.2
39.9
Minor 5ss
30.8
-2.2
3.3
42.3
44.5
Minor BPS
56
0.27
1.7
73.01
38.5

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038011
31248862 - 31503432
254571