About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31502763_31504385_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31502763 - 31504385
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGGC
5'SS Class:
major
3'SS Sequence:
TCCTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GATACATTATCC
Flanking Amino Acid:
SGEQAAFMQQKISKQTTK*
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.2
38.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
81.7
0.71
0.7
76.1
32.5
Minor 5ss
30.8
-2.2
3.3
42.3
44.5
Minor BPS
49.8
-0
1.9
63
41.5

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024368
31248862 - 31504412
255551