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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31502763_31538924_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31502763 - 31538924
Intron Length:
36162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGGC
5'SS Class:
major
3'SS Sequence:
TTCTTGGCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TTTCTTTCTACT
Flanking Amino Acid:
SGEQAAFMQQEFLAHRRVHQ
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.2
38.2
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
70.4
0.46
1
65.6
39.9
Minor 5ss
30.8
-2.2
3.3
42.3
44.5
Minor BPS
52.1
0.15
1.8
77.3
39

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023749
31285911 - 31545947
260037
ENSAPLT00000019909
31272996 - 31545947
272952
ENSAPLT00000010214
31248862 - 31685213
436352
ENSAPLT00000044846
31248862 - 31685248
436387
ENSAPLT00000023873
31409498 - 31560335
150838