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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31660483_31670277_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31660483 - 31670277
Intron Length:
9795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCTTATTGAAAA
Flanking Amino Acid:
ACINALLGNELEPLPEDIVH
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
86.1
0.81
0.8
80.7
31.1
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
52.7
0.08
1.7
66.51
39.6

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010214
31248862 - 31685213
436352