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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31660483_31685173_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31660483 - 31685173
Intron Length:
24691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTATTTTTACA
Flanking Amino Acid:
ACINALLGNESCWRAHGRRA
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
62.2
0.38
1.6
75.3
35.7

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044846
31248862 - 31685248
436387