About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31675803_31685173_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31675803 - 31685173
Intron Length:
9371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTATTTTTACA
Flanking Amino Acid:
VEQCFPQEGSRAAGEPMEEE
Intron Amino Acid Position:
1081

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
62.2
0.38
1.6
75.3
35.7

Associated Gene:

Gene:
HDAC9
Ensembl Gene ID:
ENSAPLG00000009768
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010214
31248862 - 31685213
436352