About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31810238_31818706_R

Intron Information:

Intron Rank:
131466
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
31810238 - 31818706
Intron Length:
8469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACCTCTG
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTATTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAGAT
U12 Branch Point Sequence:
TTTTTTCTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.3
54.7
49.5
Major BPS
70.4
0.51
1
66.8
39.9
Major PPT
85.1
0.79
0.7
78.5
34.6
Minor 5ss
41.9
-0.9
3.1
49.7
46.5
Minor BPS
51.7
0.03
1.9
70.01
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017938
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018908
31809446 - 31818778
9333