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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31854035_31855702_F

Intron Information:

Intron Rank:
134750
Intron Class:
major
Intron Phase:
Intron Coordinates:
31854035 - 31855702
Intron Length:
1668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
GTTTCTATCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGACCTCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1
58.6
40.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
74.2
0.55
0.9
66.8
39.3
Minor 5ss
28.5
-2.5
3.1
32.8
37.2
Minor BPS
56.6
0.19
1.7
66.69
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022474
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043758
31853720 - 31856514
2795