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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31960989_31962757_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31960989 - 31962757
Intron Length:
1769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTATATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGTATAATT
Flanking Amino Acid:
LHHSHEMAEKRLRGIEITDL
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.1
0.43
1
68.8
41.1
Minor 5ss
38.2
-1.3
3
49.5
41.2
Minor BPS
55
0.23
2
77.78
39

Associated Gene:

Gene:
TMEM196
Ensembl Gene ID:
ENSAPLG00000010311
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010731
31958621 - 31975442
16822