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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31964887_31975295_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31964887 - 31975295
Intron Length:
10409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGGAGC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TAATGATGAAAT
Flanking Amino Acid:
HKPQLGDSSPFLLCGICGIL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
60.8
43.8
Major BPS
76.8
0.67
1
66
40.9
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
39.2
-1.2
3.1
51.9
45.1
Minor BPS
45.4
-0.2
2.1
66.18
43.2

Associated Gene:

Gene:
TMEM196
Ensembl Gene ID:
ENSAPLG00000010311
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010731
31958621 - 31975442
16822