About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_31999360_32014634_R

Intron Information:

Intron Rank:
155546
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
31999360 - 32014634
Intron Length:
15275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATCATGA
5'SS Class:
weak_major
3'SS Sequence:
GATTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TATTCCTGATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.3
0.22
1.2
52.2
41.7
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
81.3
0.7
0.9
77.7
36.3
Minor 5ss
48.5
-0.1
2.6
56.4
47.7
Minor BPS
61.5
0.34
1.7
72.71
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031183
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042348
31997926 - 32014778
16853